<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">dan</journal-id><journal-title-group><journal-title xml:lang="ru">Доклады Национальной академии наук Беларуси</journal-title><trans-title-group xml:lang="en"><trans-title>Doklady of the National Academy of Sciences of Belarus</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">1561-8323</issn><issn pub-type="epub">2524-2431</issn><publisher><publisher-name>The Republican Unitary Enterprise Publishing House "Belaruskaya Navuka"</publisher-name></publisher></journal-meta><article-meta><article-id custom-type="elpub" pub-id-type="custom">dan-421</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ХИМИЯ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>CHEMISTRY</subject></subj-group></article-categories><title-group><article-title>IN SILICO ДИЗАЙН И ОЦЕНКА ПОТЕНЦИАЛЬНОЙ АКТИВНОСТИ НОВЫХ ИНГИБИТОРОВ ВИЧ-1 − МИМЕТИКОВ ПЕРВИЧНОГО РЕЦЕПТОРА CD4 БЕЛКА GP120 ОБОЛОЧКИ ВИРУСА</article-title><trans-title-group xml:lang="en"><trans-title>IN SILICO DESIGN AND EVALUATION OF THE POTENTIAL ACTIVITY OF NOVEL HIV-1 INHIBITORS – MIMETICS OF THE PRIMARY RECEPTOR CD4 OF THE VIRAL ENVELOPE GP120 PROTEIN</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Андрианов</surname><given-names>А. М.</given-names></name><name name-style="western" xml:lang="en"><surname>Andrianov</surname><given-names>A. M.</given-names></name></name-alternatives><bio xml:lang="ru"><p>д-р хим. наук, гл. науч. сотрудник</p></bio><bio xml:lang="en"><p>D. Sc. (Chemistry), Chief researcher</p></bio><email xlink:type="simple">andrianov@iboch.bas-net.by</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Кашин</surname><given-names>И. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Kashyn</surname><given-names>I. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>науч. сотрудник</p></bio><bio xml:lang="en"><p>Researcher</p></bio><email xlink:type="simple">lighkia@gmail.com</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Николаев</surname><given-names>Г. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Nikolaev</surname><given-names>G. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>аспирант</p></bio><bio xml:lang="en"><p>Postgraduate student</p></bio><email xlink:type="simple">reshaemsem@gmail.com</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Тузиков</surname><given-names>А. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Tuzikov</surname><given-names>A. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>член-корреспондент, д-р физ.-мат. наук, профессор, директор</p></bio><bio xml:lang="en"><p>Corresponding Member, D. Sc. (Physics and Mathematics), Professor, Director</p></bio><email xlink:type="simple">tuzikov@newman.bas-net.by</email><xref ref-type="aff" rid="aff-2"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Институт биоорганической химии Национальной академии наук Беларуси</institution></aff><aff xml:lang="en"><institution>Institute of Bioorganic Chemistry of the National Academy of Sciences of Belarus</institution></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Объединенный институт проблем информатики Национальной академии наук Беларуси</institution></aff><aff xml:lang="en"><institution>United Institute of Informatics Problems of the National Academy of Sciences of Belarus</institution></aff></aff-alternatives><pub-date pub-type="collection"><year>2017</year></pub-date><pub-date pub-type="epub"><day>15</day><month>08</month><year>2017</year></pub-date><volume>61</volume><issue>3</issue><fpage>47</fpage><lpage>57</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Андрианов А.М., Кашин И.А., Николаев Г.И., Тузиков А.В., 2017</copyright-statement><copyright-year>2017</copyright-year><copyright-holder xml:lang="ru">Андрианов А.М., Кашин И.А., Николаев Г.И., Тузиков А.В.</copyright-holder><copyright-holder xml:lang="en">Andrianov A.M., Kashyn I.A., Nikolaev G.I., Tuzikov A.V.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://doklady.belnauka.by/jour/article/view/421">https://doklady.belnauka.by/jour/article/view/421</self-uri><abstract><p>На основе методологии клик-химии осуществлен in silico дизайн новых ингибиторов проникновения ВИЧ-1, способных имитировать первичный рецептор CD4 белка gp120 оболочки вируса. С помощью методов молекулярного докинга проведена оценка нейтрализующей активности сконструированных молекул, в результате которой идентифицированы 6 соединений-лидеров, перспективных для синтеза и биологических испытаний. Показано, что обнаруженные соединения формируют базовые структуры для разработки новых эффективных анти-ВИЧ препаратов с широкой вирусной нейтрализацией. </p></abstract><trans-abstract xml:lang="en"><p>In silico design of novel HIV-1 entry inhibitors able to mimic the primary receptor CD4 of the viral envelope gp120 protein was carried out using the click-chemistry methodology. The neutralizing activity of the designed molecules was evaluated by molecular docking, resulting in the discovery of 6 top compounds promising for synthesis and biological trials. The designed compounds may be used as basic structures for the development of novel, potent, and safe antiviral drugs with broad HIV-1 neutralization.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>ВИЧ-1</kwd><kwd>белок gp120</kwd><kwd>ингибиторы проникновения ВИЧ-1</kwd><kwd>компьютерное конструирование лекарств</kwd><kwd>методология клик-химии</kwd><kwd>молекулярный докинг</kwd></kwd-group><kwd-group xml:lang="en"><kwd>HIV-1</kwd><kwd>gp120 protein</kwd><kwd>HIV-1 entry inhibitors</kwd><kwd>computer-aided drug design</kwd><kwd>click chemistry methodology</kwd><kwd>molecular docking</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Андрианов, А. М. Конформационный анализ белков. Теория и приложения / А. М. Андрианов. – Минск: Белорусская наука, 2013. – 518 с.</mixed-citation><mixed-citation xml:lang="en">Andrianov A. M. Conformational analysis of proteins. Theory and applications. Minsk, Belorusskaya nauka Publ., 2013. 518 p. (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Kolb, H. C. Click chemistry: Diverse chemical function from a few good reactions / H. C. Kolb, M. G. Finn, K. B. Sharpless // Angew. Chem. Int. Ed. – 2001. – Vol. 40, N 11. – P. 2004–2021. doi.org/10.1002/1521-3773(20010601)40:11%3C2004::aid-anie2004%3E3.3.co;2-x</mixed-citation><mixed-citation xml:lang="en">Kolb H. C., Finn M. G., Sharpless K. B. Click chemistry: Diverse chemical function from a few good reactions. Angewandte Chemie International Edition, 2001, vol. 40, no. 11, pp. 2004–2021. doi.org/10.1002/1521-3773(20010601)40:11%3C2004::aid-anie2004%3E3.3.co;2-x</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Arts, E. J. HIV-1 antiretroviral drug therapy / E. J. Arts, D. J. Hazuda // Cold Spring Harb. Perspect. Med. – 2012. – Vol. 2, N 4. – a007161. doi: 10.1101/cshperspect.a007161</mixed-citation><mixed-citation xml:lang="en">Arts E. J., Hazuda D. J. HIV-1 antiretroviral drug therapy. Cold Spring Harbor Perspectives in Medicine, 2012, vol. 2, no. 4, a007161. doi: 10.1101/cshperspect.a007161</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Tilton, J. C. Entry inhibitors in the treatment of HIV-1 infection / J. C. Tilton, R. W. Doms // Antiviral Res. – 2010. – Vol. 85, N 1. – P. 91–100. doi.org/10.1016/j.antiviral.2009.07.022</mixed-citation><mixed-citation xml:lang="en">Tilton J. C., Doms R. W. Entry inhibitors in the treatment of HIV-1 infection. Antiviral Research, 2010, vol. 85, no. 1, pp. 91–100. doi.org/10.1016/j.antiviral.2009.07.022</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Andrianov, A. M. HIV-1 gp120 V3 loop for anti-AIDS drug discovery: computer-aided approaches to the problem solving / A. M. Andrianov // Expert Opin. Drug Discov. – 2011. – Vol. 6, N 4. – P. 419–435. doi: 10.1517/17460441.2011.560603</mixed-citation><mixed-citation xml:lang="en">Andrianov A. M. HIV-1 gp120 V3 loop for anti-AIDS drug discovery: computer-aided approaches to the problem solving. Expert Opinion in Drug Discovery, 2011, vol. 6, no. 4, pp. 419–435. doi: 10.1517/17460441.2011.560603</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody / P. D. Kwong [et al.] // Nature. – 1998. – Vol. 393. – P. 648–659. doi:10.1038/31405</mixed-citation><mixed-citation xml:lang="en">Kwong P. D., Wyatt R., Robinson J., Sweet R. W., Sodroski J., Hendrickson W. A. Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody. Nature, 1998, vol. 393, pp. 648–659. doi:10.1038/31405</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings / C. A. Lipinski [et al.] // Adv. Drug Deliv. Rev. – 2001. – Vol. 46, N 1–3. – P. 3–26. dx.doi.org/10.1016/S0169-409X(00)00129-0</mixed-citation><mixed-citation xml:lang="en">Lipinski C. A., Lombardo F., Dominy B. W., Feeney P. J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced Drug Delivery Reviews, 2001, vol. 46, no. 1–3, pp. 3–26. dx.doi.org/10.1016/S0169-409X(00)00129-0</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Structure-based design, synthesis and validation of CD4-mimetic small molecule inhibitors of HIV-1 entry: Conversion of a viral entry agonist to an antagonist / J. R. Courter [et al.] // Acc. Chem. Res. – 2014. – Vol. 47, N 4. – P. 1228–1237. doi. org/10.1021/ar4002735</mixed-citation><mixed-citation xml:lang="en">Courter J. R., Madani N., Sodroski J., Schön A., Freire E., Kwong P. D., Hendrickson W. A., Chaiken I. M., LaLonde J. M., Smith A. B. Structure-based design, synthesis and validation of CD4-mimetic small molecule inhibitors of HIV-1 entry: Conversion of a viral entry agonist to an antagonist. Accounts of Chemical Research, 2014, vol. 47, no. 4, pp. 1228–1237. doi. org/10.1021/ar4002735</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Structure-based design of a small molecule CD4-antagonist with broad spectrum anti-HIV-1 activity / F. Curreli [et al.] // J. Med. Chem. – 2015. – Vol. 58, N 17. – P. 6909–6927. doi.org/10.1021/acs.jmedchem.5b00709</mixed-citation><mixed-citation xml:lang="en">Curreli F., Kwon Y. D., Zhanga H., Scacalossi D., Belov D. S., Tikhonov A. A., Andreev I. A., Altieri A., Kurkin A. V., Kwong P. D., Debnath A. K. Structure-based design of a small molecule CD4-antagonist with broad spectrum anti-HIV-1 ac-D., Debnath A. K. Structure-based design of a small molecule CD4-antagonist with broad spectrum anti-HIV-1 ac-D., Debnath A. K. Structure-based design of a small molecule CD4-antagonist with broad spectrum anti-HIV-1 ac-K. Structure-based design of a small molecule CD4-antagonist with broad spectrum anti-HIV-1 ac-K. Structure-based design of a small molecule CD4-antagonist with broad spectrum anti-HIV-1 activity. Journal of Medicinal Chemistry, 2015, vol. 58, no. 17, pp. 6909–6927. doi.org/10.1021/acs.jmedchem.5b00709</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Liu, Y. Optimization of CD4/gp120 inhibitors by thermodynamic-guided alanine-scanning mutagenesis / Y. Liu, A. Schön, E. Freire // Chem. Biol. Drug Des. – 2013. – Vol. 81, N 1. – P. 72–78. doi.org/10.1111/cbdd.12075</mixed-citation><mixed-citation xml:lang="en">Liu Y., Schön A., Freire E. Optimization of CD4/gp120 inhibitors by thermodynamic-guided alanine-scanning muta-genesis. Chemical Biology and Drug Design, 2013, vol. 81, no. 1, pp. 72–78. doi.org/10.1111/cbdd.12075</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">The human immunodeﬁciency virus-gp120 binding-site on CD4 − Delineation by quantitative equilibrium and kinetic binding studies of mutants in conjunction with a high-resolution CD4 atomic-structure / U. Moebius [et al.] // J. Exp. Med. – 1992. – Vol. 176, N 2. – P. 507–517. doi.org/10.1084/jem.176.2.507</mixed-citation><mixed-citation xml:lang="en">Moebius U., Clayton L. K., Abraham S., Harrison S. C., Reinherz E. L. The human immunodeﬁciency virus-gp120 binding-site on CD4 – Delineation by quantitative equilibrium and kinetic binding studies of mutants in conjunction with a high-resolution CD4 atomic-structure. The Journal of Experimental Medicine, 1992, vol. 176, no. 2, pp. 507–517. doi. org/10.1084/jem.176.2.507</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Identiﬁcation of individual human-immunodeﬁciency-virus type-1 gp120 amino-acids important for CD4 receptor-binding / U. Olshevsky [et al.] // J. Virol. – 1990. – Vol. 64, N 12. – P. 5701–5707.</mixed-citation><mixed-citation xml:lang="en">Olshevsky U., Helseth E., Furman C., Li J., Haseltine W., Sodroski J. Identiﬁcation of individual human-immunodeﬁciency-virus type-1 gp120 amino-acids important for CD4 receptor-binding. Journal of Virology, 1990, vol. 64, no. 12, pp. 5701–5707.</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Identiﬁcation of N-phenyl-N′-(2,2,6,6-tetramethyl-piperidin-4-yl)-oxalamides as a new class of HIV-1 entry inhibitors that prevent gp120 binding to CD4 / Q. Zhao [et al.] // Virology. – 2005. – Vol. 339, N 2. – P. 213–225. doi.org/10.1016/j. virol.2005.06.008</mixed-citation><mixed-citation xml:lang="en">Zhao Q., Ma L., Jiang S., Lu H., Liu S., He Y., Strick N., Neamati N., Debnath A. K. Identiﬁcation of N-phenyl-N′-(2,2,6,6-tetramethyl-piperidin-4-yl)-oxalamides as a new class of HIV-1 entry inhibitors that prevent gp120 binding to CD4. Virology, 2005, vol. 339, no. 2, pp. 213–225. doi.org/10.1016/j.virol.2005.06.008</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops / Y. D. Kwon [et al.] // Proc. Natl. Acad. Sci. USA. – 2012. – Vol. 109, N 15. – P. 5663–5668. doi.org/10.1073/pnas.1112391109</mixed-citation><mixed-citation xml:lang="en">Kwon Y. D., Finzi A., Wu X., Dogo-Isonagie C., Lee L. K., Moore L. R., Schmidt S. D., Stuckey J., Yang Y., Zhou T., Zhu J., Vicic D. A., Debnath A. K., Shapiro L., Bewley C. A., Mascola J. R., Sodroski J. G., Kwong P. D. Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops. Proceedings of the National Academy of Sciences of the United States of America, 2012, vol. 109, no. 15, pp. 5663–5668. doi. org/10.1073/pnas.1112391109</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Durrant, J. D. AutoGrow: a novel algorithm for protein inhibitor design / J. D. Durrant, R. E. Amaro, J. A. McCammon // Chem. Biol. Drug Des. – 2009. – Vol. 73, N 2. – P. 168–178. doi.org/10.1111/j.1747-0285.2008.00761.x</mixed-citation><mixed-citation xml:lang="en">Durrant J. D., Amaro R. E., McCammon J. A. AutoGrow: A novel algorithm for protein inhibitor design. Chemical Biology and Drug Design, 2009, vol. 73, no. 2, pp. 168–178. doi.org/10.1111/j.1747-0285.2008.00761.x</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
