danДоклады Национальной академии наук БеларусиDoklady of the National Academy of Sciences of Belarus1561-83232524-2431The Republican Unitary Enterprise Publishing House "Belaruskaya Navuka"dan-459Research ArticleХИМИЯCHEMISTRYРАЗНОСТНАЯ ЯМР СПЕКТРОСКОПИЯ С ПЕРЕНОСОМ НАСЫЩЕНИЯ В ИССЛЕДОВАНИИ ВЗАИМОДЕЙСТВИЯ ЦИТОХРОМА Р450cam С 4-ФЕНИЛИМИДАЗОЛОМ: ОБНАРУЖЕНИЕ НОВОГО ПРОМЕЖУТОЧНОГО СОСТОЯНИЯ КОМПЛЕКСАSATURATION TRANSFER DIFFERENCE NMR SPECTROSCOPY IN STUDIES OF THE INTERACTION OF CYTOCHROME Р450cam WITH 4-PHENYLIMIDAZOLE: DETECTION OF A NOVEL INTERMEDIATE STATE OF THE COMPLEXБритиковВ. В.BritikovV. V.

науч. сотрудник

ул. Купревича, 5/2, 220141

Researcher

5/2, Kuprevich Str., 220141

britikov@iboch.bas-net.byПанкратоваЕ. В.PankratovaE. V.

мл. науч. сотрудник

ул. Купревича, 5/2, 220141

Junior researcher

5/2, Kuprevich Str., 220141

pankratovaelena3@gmail.comУсановС. А.UsanovS. A.

член-корреспондент, д-р хим. наук, профессор

ул. Купревича, 5/2, 220141

Corresponding Member, D. Sc. (Chemistry), Professor

5/2, Kuprevich Str., 220141

usanov@iboch.bas-net.byИнститут биоорганической химии Национальной академии наук Беларуси, МинскInstitute of Bioorganic Chemistry of the National Academy of Sciences of Belarus, Minsk2017171220176156679Copyright © Бритиков В.В., Панкратова Е.В., Усанов С.А., 20172017Бритиков В.В., Панкратова Е.В., Усанов С.А.Britikov V.V., Pankratova E.V., Usanov S.A.Данная работа распространяется под лицензией Creative Commons Attribution 4.0.This work is licensed under a Creative Commons Attribution 4.0 License.https://doklady.belnauka.by/jour/article/view/459

Настоящая работа посвящена исследованию взаимодействия цитохрома P450cam c 4-фенилимидазолом (4-PI) методом спектрофотометрии и ЯМР спектроскопии. Полученные методом разницы переноса насыщения ЯМР (РПН-ЯМР) данные указывают на существование промежуточного короткоживущего состояния 4-фенилимидазола в активном сайте P450cam, где 4-фенилимидазол связан с внутренней областью активного сайта и/или областью канала доступа субстрата без образования координационной связи между атомами азольной группы лиганда и атомом железа гема. В данной работе нами впервые применен метод РПН-ЯМР для исследования взаимодействия цитохрома P450 c лигандом. Равновесная константа диссоциации комплекса P450cam–4-PI, рассчитанная с использованием зависимости фактора амплификации РПН при нулевом времени насыщения, составляет 10,4 мМ и отличается от константы, рассчитанной при постоянном времени насыщения (34,6 мМ), что указывает на зависимость определения Kd при использовании РПН-ЯМР от времени насыщения и концентраций взаимодействующих веществ. Сравнение энергии диссоциации для промежуточного комплекса (11,2 кДж) относительно комплекса с прямой координацией (28,5 кДж) позволяет предположить, что основной вклад во взаимодействие белок–лиганд вносит гидрофобное взаимодействие 4-PI с внутренней поверхностью полости активного сайта Р450cam. Обнаруженное промежуточное состояние позволяет объяснить образование гидроксилированных форм ингибиторов азольной природы при взаимодействии с цитохромами P450, когда ингибитор находится в промежуточной форме в качестве субстрата, без образования координационной связи с атомом железа гема. 

The present work is devoted to the investigation of the interaction of cytochrome P450cam with 4-phenylimidazole (4-PI) using spectrophotometry and NMR spectroscopy. The data obtained by the STD-NMR method indicate the existence of an intermediate short-lived state of 4-phenylimidazole in the active site of P450cam where 4-phenylimidazole is bound to the inner region of the active site and/or to the substrate access channel without the formation of a coordination bond between the ligand azole group atoms and the heme iron atom. In this article, we first used the STD-NMR method to study the interaction of cytochrome P450 with ligand. The equilibrium dissociation constant of the P450cam-4-PI complex, which was calculated using the dependence of the amplification factor at zero saturation time (10.4 mM), differs from the constant that was calculated at constant saturation time (34.6 mM). This fact indicates the dependence of the Kd determination using STD-NMR at saturation time and concentrations of interacting substances. Comparison of the dissociation energy for the intermediate complex (11.2 kJ) relative to the direct coordination complex (28.5 kJ) suggests that the main contribution to the protein-ligand interaction is related to the hydrophobic interaction of 4-PI with the inner surface of the cavity of the active site of P450cam. The observed intermediate state makes it possible to explain the formation of hydroxylated forms of azole inhibitors during the interaction with cytochromes P450, when an inhibitor is in an intermediate form as a substrate and is not bound by a coordination bond with a heme iron atom. 

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The authors declare that there are no conflicts of interest present.